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Multi-Echo (fMRI) Data Analysis

Course Overview

Course Overview

Getting Started

Download Data
Install Software
Recommended Reading

Theoretical Background

MR Physics
Multi-Echo fMRI Sequences
Signal Decay
BOLD, non-BOLD, and TE-dependence with tedana
Generate tedana walkthrough figures

Practical Resources

Open Multi-Echo Datasets
Acquiring Multi-Echo Data
Processing Multi-Echo Data

Analysis Tutorials

Optimal combination with t2smap
Volume-wise T2*/S0 estimation with t2smap
Multi-Echo Denoising with tedana
Dual-Echo Denoising with nilearn
Model-free deconvolution with pySPFM
Cerebrovascular Reactivity Mapping
Manual Classification with rica
Denoising Data with ICA

Final Thoughts

References
Build Information
Glossary

Binder

Repository
Open issue

.ipynb
.md

Cerebrovascular Reactivity Mapping

Cerebrovascular Reactivity Mapping#

Check out Moia et al. [2021] and Cohen and Wang [2019].

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Model-free deconvolution with pySPFM

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Manual Classification with rica

By The tedana community

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